Comparative evaluation for the performance of environmental DNA and RNA analyses targeting mitochondrial and nuclear genes from ayu (Plecoglossus altivelis).

Environmental DNA and RNA (eDNA and eRNA; collectively eNA) analyses have the potential for non-invasive and cost-efficient biomonitoring compared with traditional capture-based surveys. Although various types of eNA particles, including not only mitochondrial eDNA but also nuclear eDNA and their transcripts, are present in the water, performances of eNA detection and quantification have not yet been evaluated sufficiently across multiple mitochondrial and nuclear genes. We conducted a tank experiment with ayu (Plecoglossus altivelis) to compare the detection sensitivity, yields per water sample, and quantification variability between replicates of each type of eNAs. The assay targeting the multi-copy nuclear gene exhibited a higher sensitivity than the assay targeting the mitochondrial gene, and both the target eDNA and eRNA concentrations per water sample were higher for the nuclear gene. On the contrary, variation in eRNA quantifications per sample does not necessarily correspond to that in eDNA, and the intra-sample quantification variability (represented as the CVs between PCR replicates) tended to be larger for eRNA than eDNA. Our results suggested that, even if suitable to the sensitive detection of species occurrence, the use of eRNA particularly derived from multi-copy nuclear gene may not be necessarily appropriate for the reliable assessment of species abundance. The findings in this study would help optimize eNA analyses for making biomonitoring and stock assessment in aquatic environments more efficient and reliable.

Application of Gradient-Dependent Optimal Interpolation in Fishery Analysis of Neon Flying Squid (Ommastrephes bartramii) in the Kuroshio-Oyashio Confluence Region.

A key issue in fishery forecasting is the collection of high-precision subsurface environmental data. A data assimilation method, named gradient-dependent optimal interpolation, was used to construct the near-real-time vertical temperature and salinity structure of a squid fishery ground based on Argo observations. The results were verified by truth-finding comparisons and applied to analyze the relationship between neon flying squid and the subsurface environment in the Kuroshio-Oyashio Confluence Region. The temperature and salinity differences between the constructed results and survey data were less than ±0.5 °C and ±0.02, respectively. Most of the relative analysis errors were less than the observational errors. Statistical analysis revealed that the most suitable temperature for squid was 18-24 °C at the near-surface (<5 m), although the squid can endure a temperature range from 11 to 12 °C at a depth of 300 m. There was an obvious thermocline in the fishery ground, with a thermocline depth of 65 m and a mean strength of approximately 0.10 °C/m. The regressive relationship between vertical temperature (thermocline parameters) and squid catch per unit effort (CPUE) followed the exponential (Gaussian) function. The most suitable salinity was 33.0-34.2 at depths shallower than 300 m.

Transient demographic dynamics of recovering fish populations shaped by past climate variability, harvest, and management.

Large-scale commercial harvesting and climate-induced fluctuations in ocean properties shape the dynamics of marine populations as interdependent drivers at varied timescales. Persistent selective removals of larger, older members of a population can distort its demographic structure, eroding resilience to fluctuations in habitat conditions and thus amplifying volatility in transient dynamics. Many historically depleted marine fish stocks have begun showing signs of recovery in recent decades following the implementation of stricter management measures. But these interventions coincide with accelerated changes in the oceans triggered by increasingly warmer, more variable climates. Applying multilevel models to annual estimates of demographic metrics of 38 stocks comprising 11 species across seven northeast Atlantic ecoregions, this study explores how time-varying local and regional climates contributed to the transient dynamics of recovering populations exposed to variable fishing pressures moderated by management actions. Analyses reveal that progressive reductions in fishing pressure and shifting climate conditions discontinuously shaped rebuilding patterns of the stocks through restorations of maternal demographic structure (reversing age truncation) and reproductive capacity. As the survival rate and demographic structure of reproductive fish improved, transient growth became less sensitive to variability in recruitment and juvenile survival and more to that in adult survival. As the biomass of reproductive fish rose, recruitment success also became increasingly regulated by density-dependent processes involving higher numbers of older fish. When reductions in fishing pressure were insufficient or delayed, however, stocks became further depleted, with more eroded demographic structures. Although warmer local climates in spawning seasons promoted recruitment success in some ecoregions, changing climates in recent decades began adversely affecting reproductive performances overall, amplifying sensitivities to recruitment variability. These shared patterns underscore the value of demographic transients in developing robust strategies for managing marine resources. Such strategies could form the foundation for effective applications of adaptive measures resilient to future environmental change.

Exploitation pattern assessment of the Japanese mantis shrimp (Oratosquilla oratoria) resource in the coastal waters of the Shandong Peninsula.

The exploitation pattern of the invertebrate resource (Oratosquilla oratoria) was investigated in the coastal waters of the Shandong Peninsula, along with the seasonal variation in body length structure, spatial distribution in abundance, and interannual stock status. Results showed that the model with only catch data suggested both stocks in the north and south were suffering from extreme fishing pressure without explicit recovery (North: B2019/BMSY = 0.468 and F2019/FMSY = 1.88 in CMSY. South: B2019/BMSY = 0.349 and F2019/FMSY = 2.59 in CMSY). However, the other two assessment models indicated that the northern stock began to gradually recover as the fishing pressure dropped to an appropriate level after the original overfished status (North: B2019/BMSY = 0.738 and F2019/FMSY = 0.882 in AMSY, B2019/BMSY = 0.831 and F2019/FMSY = 0.774 in BSM. South: B2019/BMSY = 0.164 and F2019/FMSY = 1.44 in AMSY, B2019/BMSY = 0.384 and F2019/FMSY = 1.76 in BSM). Overall, the stock status in the north was better than that in the south. This study suggested that spatial exploitation pattern and quarterly differences should be considered in fishery management process.

Evaluating adaptive management frameworks for data-limited crustacean fisheries.

Crustacean fisheries represent an increasingly important contribution to global landings, food security and economic growth, especially in developing countries. However, many productive and valuable crustacean fisheries in Asian countries are characterized by limited data availability, scientific capacity, and fisheries management. Adaptive management frameworks, which use past and emerging information to provide stock status information and management advice, have been touted as particularly applicable for managing capacity- and data-limited fisheries because they employ methods that can improve data collection and result in evaluations of stock and ecosystem status with varying levels of data and capacity. Here, we examined the application of three adaptive fisheries management frameworks (FISHE, FishPath, and DLMtool) to three typical Asian crustacean fisheries that offered contrasting data types and availability, governance, and management and socio-economic contexts. Our aim was to evaluate their suitability for crustacean fisheries and identify particular data and modeling needs and management gaps in these fisheries. We found that while each of the frameworks could effectively recommend suitable monitoring, assessment, and management options given particular contextual factors, there were also limitations with each approach. For example, FISHE took a more wholistic view of ecosystem and fisheries heath, while the other frameworks were more focused on particular aspects of management such as stock assessment (FishPath) and management strategy evaluation (MSE; DLMtool). Applications of each approach also highlighted particular challenges in collecting commercial catch data due to limited monetary investment and poorly designed monitoring programs, which further hindered the implementation of catch and effort limits. The three frameworks also shared common challenges when applied to crustacean species, mainly associated with misalignment with the unique life-histories of crustaceans compared to finfish. By comparing the outputs of the three frameworks, we highlighted their respective strengths and weaknesses and propose an integrated framework that incorporates elements of each of the three frameworks. This integration offers a more comprehensive adaptive roadmap tailored to crustacean fisheries, which involves a mix of qualitative and quantitative approaches that could be applied depending on contextual factors and capacities. To further improve the applicability of adaptive frameworks to crustacean fisheries, we suggest considering crustacean's unique life history and the effects of climate change and other environmental factors, strengthening participatory processes, and balancing socio-economic and ecological objectives.

Established and Emerging Research Trends in Norway Lobster, Nephrops norvegicus.

The burrowing crustacean decapod Nephrops norvegicus is a significant species in European Atlantic and Mediterranean fisheries. Research over the decades has mainly focused on behavioral and physiological aspects related to the burrowing lifestyle, since animals can only be captured by trawls when engaged in emergence on the seabed. Here, we performed a global bibliographic survey of all the scientific literature retrieved in SCOPUS since 1965, and terminology maps were produced with the VOSviewer software to reveal established and emerging research areas. We produced three term-map plots: term clustering, term citation, and term year. The term clustering network showed three clusters: fishery performance, assessment, and management; biological cycles in growth, reproduction, and behavior; and finally, physiology and ecotoxicology, including food products. The term citation map showed that intense research is developed on ecotoxicology and fishery management. Finally, the term year map showed that the species was first studied in its morphological and physiological aspects and more recently in relation to fishery and as a food resource. Taken together, the results indicate scarce knowledge on how burrowing behavior and its environmental control can alter stock assessment, because of the poor use of current and advanced monitoring technologies.

Trends in abundance indices derived from commercial fisheries for priority marine stocks in the Azores.

Large-scale assessments of fish and shellfish populations may be valuable for identifying the impacts of fishing pressure on stocks, but they are rarely possible due to a lack of long-term datasets. In this study, a two-part mixed-effect model for lognormal data was used to obtain historical abundance indices for 16 priority fish and shellfish stocks in the Azores region derived from catch per unit effort (kg per day at sea per vessel) and landing per unit effort (kg per landing per vessel). This data was obtained over the past 30 years under the EC Data Collection Framework and, in addition to information on effort and catch, included details about the fishing operation such as quarter, vessel length and fishing gear. This information was analysed to investigate how abundance indices changed over the years, verify if trends from different data sources were different and, if possible, relate these results to the population and fishery dynamics. The abundance indices derived from both datasets were generally in agreement with each other. Declining trends have been observed for some commercially important species, such as forkbeard Phycis phycis, European conger Conger conger, parrotfish Sparisoma cretense, red scorpionfish Scorpaena scrofa, offshore rockfish Pontinus kuhlii, common spiny lobster Palinurus elephas, splendid alfonsino Beryx splendens and alfonsino B. decadactylus, which is concerning because they are particularly slow-growing, long-lived and have low natural mortality, making them susceptible to overfishing. The results of this study are very important and should help future stock assessment and management initiatives.

Oceans of plenty? Challenges, advancements, and future directions for the provision of evidence-based fisheries management advice.

Marine population modeling, which underpins the scientific advice to support fisheries interventions, is an active research field with recent advancements to address modern challenges (e.g., climate change) and enduring issues (e.g., data limitations). Based on discussions during the 'Land of Plenty' session at the 2021 World Fisheries Congress, we synthesize current challenges, recent advances, and interdisciplinary developments in biological fisheries models (i.e., data-limited, stock assessment, spatial, ecosystem, and climate), management strategy evaluation, and the scientific advice that bridges the science-policy interface. Our review demonstrates that proliferation of interdisciplinary research teams and enhanced data collection protocols have enabled increased integration of spatiotemporal, ecosystem, and socioeconomic dimensions in many fisheries models. However, not all management systems have the resources to implement model-based advice, while protocols for sharing confidential data are lacking and impeding research advances. We recommend that management and modeling frameworks continue to adopt participatory co-management approaches that emphasize wider inclusion of local knowledge and stakeholder input to fill knowledge gaps and promote information sharing. Moreover, fisheries management, by which we mean the end-to-end process of data collection, scientific analysis, and implementation of evidence-informed management actions, must integrate improved communication, engagement, and capacity building, while incorporating feedback loops at each stage. Increasing application of management strategy evaluation is viewed as a critical unifying component, which will bridge fisheries modeling disciplines, aid management decision-making, and better incorporate the array of stakeholders, thereby leading to a more proactive, pragmatic, transparent, and inclusive management framework-ensuring better informed decisions in an uncertain world. Supplementary Information: The online version contains supplementary material available at 10.1007/s11160-022-09726-7.

Stock assessment of landlocked ayu Plecoglossus altivelis altivelis in Japan through length-based models.

Ayu Plecoglossus altivelis altivelis is a key commercially and culturally important freshwater osmeroid in Japan. Its native population is mostly an amphidromous form migrating between rivers and the sea, and not only native but also artificially landlocked forms are found in lakes and dam reservoirs. This study was undertaken to execute population feasibility and maximum sustainable yield (MSY) analysis of an artificially landlocked form of ayu during January 2018 to December 2020 in the Haidzuka reservoir and its connected Tabusa River, western Japan. FAO-ICLARM Stock Assessment Tools-II and empirical models were employed to estimate the growth function and population parameters. The estimated asymptotic length was 19.50 cm, and the growth coefficient was 0.73 year-1 with a growth performance index of 2.443. The length at first maturity and length at optimum yield were calculated as 10.77 cm and 12.63 cm, respectively, which were lower than the length at first capture (Lc = 13.15 cm), suggesting the mesh size of fishing gear favoring the sustainability of the reproductive potential of this population. The calculated total, natural, and fishing mortalities were 2.45, 1.19, and 1.26 year-1, respectively. The recruitment pattern was continuous round the year with two pulses where the peak was during July. The current level of exploitation (0.51) was slightly higher than the maximum exploitation rate (0.45), indicating a little overharvesting. The MSY of ayu in the Haidzuka reservoir was estimated to be 211 metric tons if the recommended Lc is maintained. Results of this study illustrate the first information on population characteristics of landlocked ayu and will help the development of suitable management policies for ayu fishery in lakes and dam reservoirs.

Population dynamics and fecundity estimates of Long-spined Black Sea Urchin Diadema savignyi (Audouin, 1890) from the Red Sea, Saudi Arabia.

Sea Urchin is not only the crucial keystone species for the coral reef restoration but also it has antimicrobial and anti-cancer activities. This study undertaken to focus on length weight relationship, size fecundity distribution and the estimation of fecundity from the long-spined Sea Urchin, Diadema savignyi at the coastal water of the middle Red Sea, Saudi Arabia. A total of 633 specimen of D. savignyi has been collected from the coastal water of Obhur Creak during the sampling time. In each species, total length (TL) measured as a TW = 11.908 × 0.9995 (R2 = 0.8975) through the linear regression graph and digital slide callipers and, individual body weight estimated by the digital balance. The natural and fishing mortality 2.02/yr and 0.19/yr respectively has documented from study area. The Asymptotic length value (L∞) (cm) were estimated 7.35 where the growth coefficient (K) was 0.67 from the monthly length-frequency numeric data by using FAO FISAT II software for generating and estimating the population parameters and age. However, the recruitment pattern was observed to be increased gradually with the maximum recruitment peak between the months of September and October 2021. Therefore, the estimation of fecundity varied from 49,226 ova (total length 3.1 cm) to 466,133 ova (total length 6.8). As a result, analysis of the relationship between the absolute fecundity (F) and total length (TL), and between the fecundity and drained body weight (DW), revealed a linear regression model with a positive and significant relationship at p < 0.05. This is the first approach to study the detailed population dynamic of the ecologically and economically important tropical long spine sea urchin (D. savignyi) endemic to the region. However, the result so far obtained from this research would greatly be useful towards the understanding of the detailed population structure and growth patterns that will undoubtedly help us to develop captive breeding, seed production, culture protocols, conservation strategies and isolation bioactive compounds of this high-valued species incommensurate with national and international perspectives.

Natural stocks of Pinctada margaritifera pearl oysters in Tuamotu and Gambier lagoons: New assessments, temporal evolutions, and consequences for the French Polynesia pearl farming industry.

Knowledge of the status of the black-lipped pearl oyster Pinctada margaritifera populations is critical for the sustainability of the French Polynesia black pearl farming industry. Indeed, this activity relies on collection of spat settling out of the water column, which is inherently related to the abundance of in situ benthic stocks and their reproductive capacities. From surveys performed between 2016 and 2021, we present new stock assessments of natural wild oyster populations from four contrasted pearl farming lagoons (Gambier, Takapoto, Raroia, Takume). Also using Ahe atoll historical data, we first highlight how results vary with the methods (Direct, Zonal and Cokriging) used to scale in situ density measurements to lagoon-scale stocks. Takapoto and Gambier populations were also previously surveyed at least twice since the 1980s, allowing to demonstrate with field data clear changes in stock distributions and population structures. The consequences of our findings are discussed to provide recommendations for stock monitoring and management in the future.

Tradeoffs of managing cod as a sustainable resource in fluctuating environments.

Sustainable human exploitation of living marine resources stems from a delicate balance between yield stability and population persistence to achieve socioeconomic and conservation goals. But our imperfect knowledge of how oceanic oscillations regulate temporal variation in an exploited species can obscure the risk of missing management targets. We illustrate how applying a management policy to suppress fluctuations in fishery yield in variable environments (prey density and regional climate) can present unintended outcomes in harvested predators and the sustainability of harvesting. Using Atlantic cod (Gadus morhua, an apex predatory fish) in the Barents Sea as a case study we simulate age-structured population and harvest dynamics through time-varying, density-dependent and density-independent processes with a stochastic, process-based model informed by 27-year monitoring data. In this model, capelin (Mallotus villosus, a pelagic forage fish), a primary prey of cod, fluctuations modulate the strength of density-dependent regulation primarily through cannibalistic pressure on juvenile cod survival; sea temperature fluctuations modulate thermal regulation of cod feeding, growth, maturation, and reproduction. We first explore how capelin and temperature fluctuations filtered through cod intrinsic dynamics modify catch stability and then evaluate how management to suppress short-term variability in catch targets alters overharvest risk. Analyses revealed that suppressing year-to-year catch variability impedes management responses to adjust fishing pressure, which becomes progressively out of sync with variations in cod abundance. This asynchrony becomes amplified in fluctuating environments, magnifying the amplitudes of both fishing pressure and cod abundance and then intensifying the density-dependent regulation of juvenile survival through cannibalism. Although these transient dynamics theoretically give higher average catches, emergent, quasicyclic behaviors of the population would increase long-term yield variability and elevate overharvest risk. Management strategies that overlook the interplay of extrinsic (fishing and environment) and intrinsic (life history and demography) fluctuations thus can inadvertently destabilize fish stocks, thereby jeopardizing the sustainability of harvesting. These policy implications underscore the value of ecosystem approaches to designing management measures to sustainably harvest ecologically connected resources while achieving socioeconomic security.

Stock assessment of Hooghly Croaker Panna heterolepis in the Bay of Bengal (Southern Bangladesh): implications for sustainable management.

The study describes growth pattern, growth parameter, mortality, recruitment pattern, exploitation rate (E) and maximum sustainable yield (MSY) to Panna heterolepis from the Bay of Bengal (Bangladesh). About 1223 specimens were collected from commercial fishermen for 12 consecutive months from January to December, 2019. Length-frequency data were analyzed with FAO-ICLARM Stock Assessment Tool. Moreover, our study recorded different water quality and environmental parameters including pH, rainfall, temperature and DO (dissolved oxygen) from the Bay of Bengal. The findings of the study revealed that the allometric co-efficient (b) value indicated negative allometric growth (<3.00) for P. heterolepis population. Whereas, the population dynamic parameters showed growth coefficient (K) 0.13 year-1, life-span (t max ) 3.85 year and growth performance index (Ø') 2.30. Along with this, P. heterolepis was found to grow rapidly with an asymptotic length (L ∞) of 39.08 cm. We found that the natural mortality (M =0.44 year-1) rate was almost similar with fishing mortality (F = 0.42 year-1). Consequently, the standing stock was not quite sustainable with the existing fishing strategy. Furthermore, the maximum allowable exploitation rate (E max = 0.471) was lower than the recorded exploitation rate (E = 0.490). Subsequently, overfishing is the most focal threat to the wild stock. The recruitment pattern was almost continuous throughout sampling period. Finally, the MSY was assessed at 10234.47 metric tons. Additionally, the environmental parameters denoted that the ecosystem was in a balanced condition for the wild population. The findings would be very useful to introduce appropriate fishing regulations in the Bay of Bengal and nearby ecosystem.

Stock assessment of the peacock bass Cichla temensis (Humboldt, 1821), an important fishing resource from the middle Negro river, Amazonas, Brazil / Avaliação de estoque do tucunaré Cichla temensis, um importante recurso pesqueiro do médio rio Negro, Amazonas, Brasil

Abstract Peacock bass Cichla temensis is an important species at the Amazon basin, since commercial, subsistence and recreational fisheries simultaneously exploit it. Cichla temensis is the preferred species by recreational fishers and it has been strongly exploited, mainly at the Negro river, the second largest tributary of the Amazon River. It was used data from experimental fisheries, collected at the middle stretch of Negro river, which were coupled with previously published data on its population dynamics, to run a yield per recruit model and build scenarios of sustainable fisheries. The results showed that the age of the first catch is a key variable to successful management of the peacock bass stocks at this region.

Resumo O tucunaré Cichla temensis é uma importante espécie de peixe da bacia Amazônica, uma vez que esta espécie é simultaneamente explotada pela pesca comercial e de subsistência. Além disso, é preferida pelos pescadores esportivos que atuam na região do rio Negro, o segundo maior afluente do rio Amazonas. Foram usados dados de pescarias experimentais, coletados no trecho médio do rio Negro. Estes dados foram vinculados a outros dados, previamente publicados, sobre sua dinâmica populacional, para executar um modelo de rendimento por recruta e, dessa forma, construir cenários para pesca sustentável dessa espécie. Os resultados mostraram que a idade da primeira captura é uma variável chave para gerenciar, com sucesso, os estoques de tucunarés nesta região.

An uncertain future: Effects of ocean acidification and elevated temperature on a New Zealand snapper (Chrysophrys auratus) population.

Anthropogenic CO2 emissions are warming and acidifying Earth's oceans, which is likely to lead to a variety of effects on marine ecosystems. Fish populations will be vulnerable to this change, and there is now substantial evidence of the direct and indirect effects of climate change on fish. There is also a growing effort to conceptualise the effects of climate change on fish within population models. In the present study knowledge about the response of New Zealand snapper to warming and acidification was incorporated within a stock assessment model. Specifically, a previous tank experiment on larval snapper suggested both positive and negative effects, and otolith increment analysis on wild snapper indicated that growth may initially increase, followed by a potential decline as temperatures continue to warm. As a result of this uncertainty, sensitivity analysis was performed by varying average virgin recruitment (R0) by ±30%, adult growth by ±6%, but adjusting mean size at recruitment by +48% as we had better evidence for this increase. Overall adjustments to R0 had the biggest impact on the future yield (at a management target of 40% of an unfished population) of the Hauraki Gulf snapper fishery. The most negative scenario suggested a 29% decrease in fishery yield, while the most optimistic scenario suggested a 44% increase. While largely uncertain, these results provide some scope for predicting future impacts on the snapper fishery. Given that snapper is a species where the response to climate change has been specifically investigated, increasing uncertainty in a future where climate change and other stressors interact in complex and unpredictable ways is likely to be an important consideration for the management of nearly all fish populations.

A clockwork fish: Age prediction using DNA methylation-based biomarkers in the European seabass.

Age-related changes in DNA methylation do occur. Taking advantage of this, mammalian and avian epigenetic clocks have been constructed to predict age. In fish, studies on age-related DNA methylation changes are scarce and no epigenetic clocks have been constructed. However, in fisheries and population dynamics studies there is a need for accurate estimation of age, something that is often impossible for some economically important species with the currently available methods. Here, we used the European sea bass, a marine fish the age of which can be determined with accuracy, to construct a piscine epigenetic clock, the first one in a cold-blooded vertebrate. We used targeted bisulfite sequencing to amplify 48 CpGs from four genes in muscle samples and applied penalized regressions to predict age. We thus developed an age predictor in fish that is highly accurate (0.824) and precise (2.149 years). In juvenile fish, accelerated growth due to elevated temperatures had no effect on age prediction, indicating that the clock is able to predict the chronological age independently of environmentally-driven perturbations. An epigenetic clock developed using muscle samples accurately predicted age in samples of testis but not ovaries, possibly reflecting the reproductive biology of fish. In conclusion, we report the development of the first piscine epigenetic clock, paving the way for similar studies in other species. Piscine epigenetic clocks should be of great utility for fisheries management and conservation purposes, where age determination is of crucial importance.

Sex matters: Otolith shape and genomic variation in deacon rockfish (Sebastes diaconus).

Little is known about intraspecific variation within the deacon rockfish (Sebastes diaconus), a recently described species found in the northeast Pacific Ocean. We investigated population structure among fish sampled from two nearshore reefs (Siletz Reef and Seal Rock) and one offshore site (Stonewall Bank) within a <50-km2 area off the Oregon coast. Fish from the three sample sites exhibited small but statistically significant differences based on genetic variation at >15,000 neutral loci, whether analyzed independently or classified into nearshore and offshore groups. Male and females were readily distinguished using genetic data and 92 outlier loci were associated with sex, potentially indicating differential selection between males and females. Morphometric results indicated that there was significant secondary sexual dimorphism in otolith shape, but further sampling is required to disentangle potential confounding influence of age. This study is the first step toward understanding intraspecific variation within the deacon rockfish and the potential management implications. Since differentiation among the three sample sites was small, we consider the results to be suggestive of a single stock. However, future studies should evaluate how the stock is affected by differences in sex, age, and gene flow between the nearshore and offshore environments.

Dataset on body weight, carapace width increment and growth band count of mud crabs, Scylla olivacea.

The present paper contains two datasets; i) the growth band count (GBC) of mud crab, Scylla olivacea collected from Setiu Wetlands, Terengganu coastal water, East coast of Peninsular Malaysia and ii) the increment sizes of body weight (BW) and carapace width (CW) of immature S. olivace after molting. The datasets presented here were associated with the research articles entitled i) "Study on carapace width growth band counts relationship of orange mud crab, S. olivacea (Herbst, 1796) from Terengganu Coastal Waters, Malaysia" (Hasyima-Ismail et al. 2017) [1] and ii) "Relationship between the carapace width and body weight increments and the confirmation of Stage 1 ovary after the molting of immature orange mud crabs, S. olivacea (Herbst, 1796), in captivity" (Amin-Safwan et al. 2019-2020) [2], and provided here as raw data of Supplementary materials. Raw datasets for GBC in the wild were generated by examination of the thin cross sectioning process of the gastric mill of S. olivacea. The GBC were measured for each individual crab wherein band counts ranged from 1 to 3. The analysis provides evidence that the GBC of the crabs can be determined through both mesocardiac and zygocardiac ossicles. This data is of importance to researchers for estimation of stock assessment and improvement of fisheries management to further improve policy. For the BW-CW increment data, a total of 135 immature crabs were sampled from Setiu Wetlands, Terengganu, Malaysia, and were introduced to limb autotomy technique in order to induced molt. Crabs were reared until successful molting and immediately prior to hardened shell, before final measurement of body weight and carapace width determination. Recorded data was analyzed by calculating the increment sizes, along with correlation and regression analysis between body weight and carapace width of mud crabs.

Evaluation of management procedures for a length-frequency data-limited fishery.

Management procedures (MPs) based on data-limited methods (DLMs) recently developed to give management advices for data-limited stocks worldwide are scarce or yet to be implemented on freshwater species. In this study, case studies (CSs) were developed using length-frequency data (LFD) of common carp species harvested from Dianshan Lake to estimate life-history parameters from existing methods. These CSs were later used to examine their influences when tested with various MPs under scenarios when operating models (OMs) were subjected to observation and estimation uncertainties. The results after management strategy evaluation (MSE) was run for various defined OMs showed that three MPs emerged best for providing managing advice. For high yield to be maintained during short-term periods, MinlenLopt1 suggested the smallest length at full retention (sLFR) to be 42.11 cm; while Slotlim and matlenlim2 suggested that to maintain biomass and stable spawning biomass (SBMSY) and also avoid overfishing from occurring in this fishery, sLFR should be 56.1 cm. Values given by these MPs allowed the removal of species that spawned at least once. Also, life-history parameters derived from CS4 presented the best results, being more reliable in presenting better inputs for effective management of the said fishery.

Length-weight relationship and condition factor of eight fishspecies from the upper Araguari River, State of Amapá, Brazil

The present study estimated parameters of the length-weight relationship (LWR) and allometric condition factor for eight fish species from the upper Araguari River, in the State of Amapá, Brazil. A total of 615 fish of eight species were analyzed: Acestrorhynchus falcatus, A. falcirostris, Ageneiosus inermis, Hemiodus unimaculatus, Hoplias aimara, Myloplus asterias, M. ternetzi and Tometes trilobatus. The allometric condition factor varied from 0.742 to 1.435. The coefficient of allometry ranged from 2.723 to 3.225. The coefficient of determination (R2) of the LWR ranged from 0.742 to 0.985. This is the first estimate of the length-weight relationship for fish from the Araguari River and the first record of these parameters for Myloplus ternetzi and Tometes trilobatus.